2022

Lesch,E., Schilling,M.T., Brenner,S., Yang,Y., Gruss,O.J., Knoop,V.* and Schallenberg-Rüdinger,M.* (2022) Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells. Nucleic Acids Res., 50, 9966–9983.

Strelin M.M, Zattara E.E., Ullrich K., Schallenberg-Rüdinger M. and Rensing S. (2022). Delayed differentiation of epidermal cells walls can underlie pedomorphosis in plants: the case of pedomorphic petals in the hummingbird-pollinated Caiophora hibiscifolia (Loasaceae, subfam. Loasoideae) species. EvoDevo 13, https://doi.org/10.1186/s13227-021-00186-x   

Balparda M., Elsässer M., Badia M.B., Giese J., Bovdilova A., Hüdig M., Reinmuth L., Schwarzländer M., Finkemeier I.F.*, Schallenberg-Rüdinger M.* and Maurino V.G.* (2021) Acetylation of conserved lysines fine-tune mitochondrial malate dehydrogenase activity in land plants. Plant J. 109, 92-111

2021

Takenaka M., Takenaka S., Barthel T., Frink B., Haag S., Verbitskiy D., Oldenkott B., Schallenberg-Rüdinger M., Feiler C.G., Weiss M.S., Palm G.J. and Weber G. (2021). DYW domain structures imply an unusual regulation principle in plant organellar RNA editing catalysis. Nat Catal 4, 510–22

 
 2020

Oldenkott, B., Burger, M., Hein, A.-C., Jörg, A., Senkler, J., Braun, H.-P., Knoop, V., Takenaka, M., and Schallenberg-Rüdinger, M.* (2020). One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis thaliana. Plant Cell 32, 2997-3018.

Elsässer M., Feitosa-Araujo E., Lichtenauer S., Wagner S., Fuchs P., Giese J., Kotnik F., Hippler M., Meyer A.J., Maurino V.G., Finkemeier I.F., Schallenberg-Rüdinger M. and Schwarzländer M. (2020) Photosynthetic activity triggers pH and NAD redox signatures across different plant cell compartments. bioRxiv. Available from: https://doi.org/10.1101/2020.10.31.363051

Gutmann, B., Royan, S., Schallenberg-Rüdinger, M., Lenz, H., Castleden, I.R., McDowell, R., Vacher, M.A., Tonti-Filippini, J., Bond, C.S., Knoop, V. and Small, I.D. (2020). The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants. Mol.Plant 13, 215–230.

Gerke,P., Szövenyi,P., Neubauer,A., Lenz,H., Gutmann,B., McDowell,R., Small,I., Schallenberg-Rüdinger,M., and Knoop,V. (2020). Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis. New Phytol. 225, 1974–1992.

Small,I.D., Schallenberg-Rüdinger,M., Takenaka,M., Mireau,H., and Ostersetzer-Biran,O. (2020). Plant organellar RNA editing: what 30 years of research has revealed. Plant J. 101, 1040–1056.

Fuchs,P., Rugen,N., Carrie,C., Elsässer,M., Finkemeier,I., Giese,J., Hildebrandt,T.M., Kühn,K., Maurino,V.G., Ruberti,C., Schallenberg-Rüdinger,M., Steinbeck,J., Braun,H.P., Eubel,H., Meyer,E.H., Müller-Schüssele,S.J., and Schwarzländer,M. (2020). Single organelle function and organization as estimated from Arabidopsis mitochondrial proteomics. Plant J. 101, 420–441.

2019

Oldenkott,B., Yang,Y., Lesch,E., Knoop,V. and Schallenberg-Rüdinger,M.* (2019). Plant-type Pentatricopeptide Repeat proteins with a DYW domain drive C-to-U RNA editing in Escherichia coli. Comm Biol. 2, 85.

2017

Hiss,M., Schneider,L., Grosche,C., Barth,M.A., Neu,C., Symeonidi,A., Ullrich,K.K., Perroud,P.-F., Schallenberg-Rüdinger,M., Rensing,S.A. (2017). Combination of the Endogenous lhcsr1 Promoter and Codon Usage Optimization Boosts Protein Expression in the Moss Physcomitrella patens. Front. Plant. Sci. 8, 1842.

Schallenberg-Rüdinger,M.*, Oldenkott,B., Hiss,M., Trinh,P.L., Knoop,V., and Rensing,S.A. (2017). A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens. Plant Cell Physiol 58, 496-507.

Hiss,M., Meyberg,R., Westermann,J., Haas,F.B., Schneider,L., Schallenberg-Rüdinger,M., Ullrich,K.K., and Rensing,S.A. (2017). Sexual reproduction, sporophyte development and molecular variation in the model moss Physcomitrella patens: introducing the ecotype Reute. Plant J. 90, 606-620.

2016

Schallenberg-Rüdinger,M. and Knoop,V. (2016). Coevolution of Organelle RNA Editing and Nuclear Specificity Factors in Early Land Plants. In Genomes and Evolution of Charophytes, Bryophytes, Lycophytes and Ferns, S.Rensing, ed. (Amsterdam: Elsevier), pp. 37-93.

2015

Schaap,P., Barrantes,I., Minx,P., Sasaki,N., Anderson,R.W., Benard,M., Biggar,K.K., Buchler,N.E., Bundschuh,R., Chen,X., Fronick,C., Fulton,L., Golderer,G., Jahn,N., Knoop,V., Landweber,L.F., Maric,C., Miller,D., Noegel,A.A., Peace,R., Pierron,G., Sasaki,T., Schallenberg-Rüdinger,M., Schleicher,M., Singh,R., Spaller,T., Storey,K.B., Suzuki,T., Tomlinson,C., Tyson,J.J., Warren,W.C., Werner,E.R., Werner-Felmayer,G., Wilson,R.K., Winckler,T., Gott,J.M., Glockner,G., and Marwan,W. (2015). The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-component and Metazoan-type Tyrosine Kinase Signaling. Genome Biol. Evol. 8, 109-25.

2014

Beike,A.K., von,S.M., Schallenberg-Rüdinger,M., Hanke,S.T., Follo,M., Quandt,D., McDaniel,S.F., Reski,R., Tan,B.C., and Rensing,S.A. (2014). Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex. BMC. Evol. Biol. 14, 158.

Hiss,M., Laule,O., Meskauskiene,R.M., Arif,M.A., Decker,E.L., Erxleben,A., Frank,W., Hanke,S.T., Lang,D., Martin,A., Neu,C., Reski,R., Richardt,S., Schallenberg-Rüdinger,M., Szovenyi,P., Tiko,T., Wiedemann,G., Wolf,L., Zimmermann,P., and Rensing,S.A. (2014). Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions. Plant J. 79, 530-539.

2013

Schallenberg-Rüdinger,M., Kindgren,P., Zehrmann,A., Small,I., and Knoop,V. (2013a). A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype. Plant J. 76, 420-432.

Schallenberg-Rüdinger,M., Lenz,H., Polsakiewicz,M., Gott,J.M., and Knoop,V. (2013b). A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes. RNA. Biol. 10, 1549-1556.

2012 

Rüdinger,M.*, Volkmar,U., Lenz,H., Groth-Malonek,M., and Knoop,V. (2012). Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria. J. Mol. Evol. 74, 37-51.

2011 

Rüdinger,M., Szövényi,P., Rensing,S.A., and Knoop,V. (2011a). Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica. Plant J. 67, 370-380.

Rüdinger,M., Fritz-Laylin,L., Polsakiewicz,M., and Knoop,V. (2011b). Plant-type mitochondrial RNA editing in the protist Naegleria gruberi. RNA. 17, 2058-2062.

2010 

Händeler,K., Wagele,H., Wahrmund,U., Rüdinger,M., and Knoop,V. (2010). Slugs' last meals: molecular identification of sequestered chloroplasts from different algal origins in Sacoglossa (Opisthobranchia, Gastropoda). Mol. Ecol. Resour. 10, 968-978

 Knoop,V. and Rüdinger,M. (2010). DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer? FEBS Lett. 584, 4287-4291.

Lenz,H., Rüdinger,M., Volkmar,U., Fischer,S., Herres,S., Grewe,F., and Knoop,V. (2010). Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature. Curr. Genet. 56, 189-201.

2009-2007

Rüdinger,M., Funk,H.T., Rensing,S.A., Maier,U.G., and Knoop,V. (2009). RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal. Mol. Genet. Genomics 281, 473-481.

Rüdinger,M., Polsakiewicz,M., and Knoop,V. (2008). Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts. Mol. Biol. Evol. 25, 1405-1414.

Salone,V., Rüdinger,M., Polsakiewicz,M., Hoffmann,B., Groth-Malonek,M., Szurek,B., Small,I., Knoop,V., and Lurin,C. (2007). A hypothesis on the identification of the editing enzyme in plant organelles. FEBS Lett. 581, 4132-4138.

*corresponding author

See also

Google Scholar: Mareike Schallenberg-Rüdinger